EXHARA

Choose file:

Browse...

Data transformation:

Z-score of FPKM values

Logaritmic: log(FPKM values + 1)

Clustering by row

Clustering by columns

Show SRA Bioproject ID

Set plot height:

Set plot width:

Download plot Excel input example

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Use Exhara to inspect gene expression across all RNA-Seq runs used in the AggGCNs App. A total of 67, 35, 42, 2 and 131 SRA studies (1,615, 817, 670, 36 and 2,766 runs) from berry (fruit + seedless fruit), fruit + flower, leaf, root and all tissues respectively, were included. The data presented in the ''Fruit + flower'' and ''Leaf'' tabs correspond to the processed SRA runs in Orduña et al. (2020). Major orchestration of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine. bioRxiv. doi:2020.12.31.424746.

Choose file:

Browse...

Data transformation:

Z-score of FPKM values

Logaritmic: log(FPKM values + 1)

Clustering by row

Clustering by columns

Show SRA Bioproject ID

Set plot height:

Set plot width:

Download plot Excel input example

----

Use Exhara to inspect gene expression across all RNA-Seq runs used in the AggGCNs App. A total of 67, 35, 42, 2 and 131 SRA studies (1,615, 817, 670, 36 and 2,766 runs) from berry (fruit + seedless fruit), fruit + flower, leaf, root and all tissues respectively, were included. The data presented in the ''Fruit + flower'' and ''Leaf'' tabs correspond to the processed SRA runs in Orduña et al. (2020). Major orchestration of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine. bioRxiv. doi:2020.12.31.424746.

Choose file:

Browse...

Data transformation:

Z-score of FPKM values

Logaritmic: log(FPKM values + 1)

Clustering by row

Clustering by columns

Show SRA Bioproject ID

Set plot height:

Set plot width:

Download plot Excel input example

----

Use Exhara to inspect gene expression across all RNA-Seq runs used in the AggGCNs App. A total of 67, 35, 42, 2 and 131 SRA studies (1,615, 817, 670, 36 and 2,766 runs) from berry (fruit + seedless fruit), fruit + flower, leaf, root and all tissues respectively, were included. The data presented in the ''Fruit + flower'' and ''Leaf'' tabs correspond to the processed SRA runs in Orduña et al. (2020). Major orchestration of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine. bioRxiv. doi:2020.12.31.424746.

Choose file:

Browse...

Data transformation:

Z-score of FPKM values

Logaritmic: log(FPKM values + 1)

Clustering by row

Clustering by columns

Show SRA Bioproject ID

Set plot height:

Set plot width:

Download plot Excel input example

----

Use Exhara to inspect gene expression across all RNA-Seq runs used in the AggGCNs App. A total of 67, 35, 42, 2 and 131 SRA studies (1,615, 817, 670, 36 and 2,766 runs) from berry (fruit + seedless fruit), fruit + flower, leaf, root and all tissues respectively, were included. The data presented in the ''Fruit + flower'' and ''Leaf'' tabs correspond to the processed SRA runs in Orduña et al. (2020). Major orchestration of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine. bioRxiv. doi:2020.12.31.424746.

Choose file:

Browse...

Data transformation:

Z-score of FPKM values

Logaritmic: log(FPKM values + 1)

Clustering by row

Clustering by columns

Show SRA Bioproject ID

Set plot height:

Set plot width:

Download plot Excel input example

----

Use Exhara to inspect gene expression across all RNA-Seq runs used in the AggGCNs App. A total of 67, 35, 42, 2 and 131 SRA studies (1,615, 817, 670, 36 and 2,766 runs) from berry (fruit + seedless fruit), fruit + flower, leaf, root and all tissues respectively, were included. The data presented in the ''Fruit + flower'' and ''Leaf'' tabs correspond to the processed SRA runs in Orduña et al. (2020). Major orchestration of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine. bioRxiv. doi:2020.12.31.424746.